Published by the Foundation for Open Access Statistics
Editors-in-chief: Bettina Grün, Torsten Hothorn, Edzer Pebesma, Achim Zeileis    ISSN 1548-7660; CODEN JSSOBK
LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms | Shin | Journal of Statistical Software
Authors: Ji-Hyung Shin, Sigal Blay, Brad McNeney, Jinko Graham
Title: LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
Abstract: We describe the R function LDheatmap() which produces a graphical display, as a heat map, of pairwise linkage disequilibrium measurements between single nucleotide polymorphisms within a genomic region. LDheatmap() uses the grid graphics system, an alternative to the traditional R graphics system. The features of the LDheatmap() function and the use of tools from the grid package to modify heat maps are illustrated by examples.

Page views:: 10690. Submitted: 2006-05-15. Published: 2006-09-20.
Paper: LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms     Download PDF (Downloads: 11378)
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LDheatmap_0.2-2.tar.gz: LD heatmap 0.2-2 R package Download (Downloads: 1655; 219KB)

DOI: 10.18637/jss.v016.c03

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