Published by the Foundation for Open Access Statistics Editors-in-chief: Bettina Grün, Torsten Hothorn, Rebecca Killick, Edzer Pebesma, Achim Zeileis    ISSN 1548-7660; CODEN JSSOBK
Authors: B. Emma Huang, Rohan Shah, Andrew W. George
Title: dlmap: An R Package for Mixed Model QTL and Association Analysis
Abstract: dlmap is a software package capable of mapping quantitative trait loci (QTL) in a variety of genetic studies. Unlike most other QTL mapping packages, dlmap is built on a linear mixed model platform, and thus can simultaneously handle multiple sources of genetic and environmental variation. Furthermore, it can accommodate both experimental crosses and association mapping populations within a versatile modeling framework. The software implements a mapping algorithm with separate detection and localization stages in a user-friendly manner. It accepts data in various common formats, has a flexible modeling environment, and summarizes results both graphically and numerically.

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Paper: dlmap: An R Package for Mixed Model QTL and Association Analysis     Download PDF (Downloads: 6749)
Supplements:
dlmap_1.13.tar.gz: R source package Download (Downloads: 464; 50KB)
v50i06.R: R example code from the paper Download (Downloads: 501; 2KB)
v50i06-replication.zip: Replication materials (data and code) Download (Downloads: 736; 546KB)
DOI: 10.18637/jss.v050.i06

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Paper: Creative Commons Attribution 3.0 Unported License
Code: GNU General Public License (at least one of version 2 or version 3) or a GPL-compatible license.