Published by the Foundation for Open Access Statistics
Editors-in-chief: Bettina Grün, Torsten Hothorn, Edzer Pebesma, Achim Zeileis    ISSN 1548-7660; CODEN JSSOBK
Estimating Population Abundance Using Sightability Models: R SightabilityModel Package | Fieberg | Journal of Statistical Software
Authors: John R. Fieberg
Title: Estimating Population Abundance Using Sightability Models: R SightabilityModel Package
Abstract: Sightability models are binary logistic-regression models used to estimate and adjust for visibility bias in wildlife-population surveys (Steinhorst and Samuel 1989). Estimation proceeds in 2 stages: (1) Sightability trials are conducted with marked individuals, and logistic regression is used to estimate the probability of detection as a function of available covariates (e.g., visual obstruction, group size). (2) The fitted model is used to adjust counts (from future surveys) for animals that were not observed. A modified Horvitz-Thompson estimator is used to estimate abundance: counts of observed animal groups are divided by their inclusion probabilites (determined by plot-level sampling probabilities and the detection probabilities estimated from stage 1). We provide a brief historical account of the approach, clarifying and documenting suggested modifications to the variance estimators originally proposed by Steinhorst and Samuel (1989). We then introduce a new R package, SightabilityModel, for estimating abundance using this technique. Lastly, we illustrate the software with a series of examples using data collected from moose (Alces alces) in northeastern Minnesota and mountain goats (Oreamnos americanus) in Washington State.

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Paper: Estimating Population Abundance Using Sightability Models: R SightabilityModel Package     Download PDF (Downloads: 2005)
Supplements:
SightabilityModel_1.2.tar.gz: R source package Download (Downloads: 412; 340KB)
v51i09.R: R example code from the paper Download (Downloads: 485; 4KB)

DOI: 10.18637/jss.v051.i09

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Code: GNU General Public License (at least one of version 2 or version 3) or a GPL-compatible license.