Published by the Foundation for Open Access Statistics
Editors-in-chief: Bettina Grün, Torsten Hothorn, Edzer Pebesma, Achim Zeileis    ISSN 1548-7660; CODEN JSSOBK
Software for Distributed Computation on Medical Databases: A Demonstration Project | Narasimhan | Journal of Statistical Software
Authors: Balasubramanian Narasimhan, Daniel L. Rubin, Samuel M. Gross, Marina Bendersky, Philip W. Lavori
Title: Software for Distributed Computation on Medical Databases: A Demonstration Project
Abstract: Bringing together the information latent in distributed medical databases promises to personalize medical care by enabling reliable, stable modeling of outcomes with rich feature sets (including patient characteristics and treatments received). However, there are barriers to aggregation of medical data, due to lack of standardization of ontologies, privacy concerns, proprietary attitudes toward data, and a reluctance to give up control over end use. Aggregation of data is not always necessary for model fitting. In models based on maximizing a likelihood, the computations can be distributed, with aggregation limited to the intermediate results of calculations on local data, rather than raw data. Distributed fitting is also possible for singular value decomposition. There has been work on the technical aspects of shared computation for particular applications, but little has been published on the software needed to support the "social networking" aspect of shared computing, to reduce the barriers to collaboration. We describe a set of software tools that allow the rapid assembly of a collaborative computational project, based on the flexible and extensible R statistical software and other open source packages, that can work across a heterogeneous collection of database environments, with full transparency to allow local officials concerned with privacy protections to validate the safety of the method. We describe the principles, architecture, and successful test results for the site-stratified Cox model and rank-k singular value decomposition.

Page views:: 474. Submitted: 2015-03-02. Published: 2017-05-03.
Paper: Software for Distributed Computation on Medical Databases: A Demonstration Project     Download PDF (Downloads: 121)
Supplements:
distcomp_1.0.tar.gz: R source package Download (Downloads: 7; 384KB)
v77i13-replication.zip: Replication materials Download (Downloads: 6; 7MB)

DOI: 10.18637/jss.v077.i13

by
This work is licensed under the licenses
Paper: Creative Commons Attribution 3.0 Unported License
Code: GNU General Public License (at least one of version 2 or version 3) or a GPL-compatible license.