Published by the Foundation for Open Access Statistics Editors-in-chief: Bettina Grün, Torsten Hothorn, Edzer Pebesma, Achim Zeileis    ISSN 1548-7660; CODEN JSSOBK
Authors: Robert J. B. Goudie, Rebecca M. Turner, Daniela De Angelis, Andrew Thomas
Title: MultiBUGS: A Parallel Implementation of the BUGS Modeling Framework for Faster Bayesian Inference
Abstract: MultiBUGS is a new version of the general-purpose Bayesian modeling software BUGS that implements a generic algorithm for parallelizing Markov chain Monte Carlo (MCMC) algorithms to speed up posterior inference of Bayesian models. The algorithm parallelizes evaluation of the product-form likelihoods formed when a parameter has many children in the directed acyclic graph (DAG) representation; and parallelizes sampling of conditionally-independent sets of parameters. A heuristic algorithm is used to decide which approach to use for each parameter and to apportion computation across computational cores. This enables MultiBUGS to automatically parallelize the broad range of statistical models that can be fitted using BUGS-language software, making the dramatic speed-ups of modern multi-core computing accessible to applied statisticians, without requiring any experience of parallel programming. We demonstrate the use of MultiBUGS on simulated data designed to mimic a hierarchical e-health linked-data study of methadone prescriptions including 425,112 observations and 20,426 random effects. Posterior inference for the e-health model takes several hours in existing software, but MultiBUGS can perform inference in only 28 minutes using 48 computational cores.

Page views:: 320. Submitted: 2017-09-28. Published: 2020-10-07.
Paper: MultiBUGS: A Parallel Implementation of the BUGS Modeling Framework for Faster Bayesian Inference     Download PDF (Downloads: 116)
Supplements:
MultiBUGS-1.0.zip: Software package Download (Downloads: 4; 8MB)
MultiBUGS-1.0-source.zip: Source code Download (Downloads: 6; 7MB)
v95i07-replication.zip: Replication materials Download (Downloads: 5; 1MB)

DOI: 10.18637/jss.v095.i07

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Paper: Creative Commons Attribution 3.0 Unported License
Code: GNU General Public License (at least one of version 2 or version 3) or a GPL-compatible license.