TY - JOUR
AU - Mogensen, Ulla B.
AU - Ishwaran, Hemant
AU - Gerds, Thomas A.
PY - 2012/09/18
Y2 - 2023/10/02
TI - Evaluating Random Forests for Survival Analysis Using Prediction Error Curves
JF - Journal of Statistical Software
JA - J. Stat. Soft.
VL - 50
IS - 11
SE - Articles
DO - 10.18637/jss.v050.i11
UR - https://www.jstatsoft.org/index.php/jss/article/view/v050i11
SP - 1 - 23
AB - Prediction error curves are increasingly used to assess and compare predictions in survival analysis. This article surveys the R package <b>pec</b> which provides a set of functions for efficient computation of prediction error curves. The software implements inverse probability of censoring weights to deal with right censored data and several variants of cross-validation to deal with the apparent error problem. In principle, all kinds of prediction models can be assessed, and the package readily supports most traditional regression modeling strategies, like Cox regression or additive hazard regression, as well as state of the art machine learning methods such as random forests, a nonparametric method which provides promising alternatives to traditional strategies in low and high-dimensional settings. We show how the functionality of <b>pec</b> can be extended to yet unsupported prediction models. As an example, we implement support for random forest prediction models based on the R packages <b>randomSurvivalForest</b> and <b>party</b>. Using data of the Copenhagen Stroke Study we use <b>pec</b> to compare random forests to a Cox regression model derived from stepwise variable selection.
ER -