This directory contains reproducible code for the IF2 example.

The system for this example is set up similarly, but a little more simply,
to the system for the PMCMC example.

The files for running the cases are as follows.  These use each other in the
order listed.

IF2example_run_all_cases.R: source() this file to run the entire example. 
This writes configuration files and calls
IF2example_setup_and_run_one_case.R as a script.

IF2example_setup_and_run_one_case.R: This reads a configuration file,
source()s IF2example_run_one_case, and saves the results.  This is designed
to be run as a script, so one might need to do "chmod u+x
IF2example_setup_and_run_one_case.R".

IF2example_run_one_case.R: This contains the actual model and algorithm for
one case.

IF2example_process_results.R: This reads all the results files and creates
the figure in the paper.
