The scripts in this folder can be re-run to replicate the benchmark comparison in Section 5.

The main script is "run-all.R" which will run 100 repetitions of the three methods (MAGI, deBInfer, and CollocInfer), and then extract the numerical summaries needed for Table 1. For simplicity the script runs everything sequentially on a single CPU core, but the repetitions can be run in parallel to reduce the time needed to complete the benchmark. Note that the benchmark timings will depend on the CPU used. The full outputs of each method will be saved in the "results" folder. The summaries from the output are saved as Section5_benchmark.rda in the data/ folder.
